Any idea why the last 2 tracks weren't in the leaked version?

Also, out of curiosity, does iTunes distribute leaked songs?

No.
And funnily enough, they don't even have Tool in their Music Store.

They were in the leaked version I downloaded. You must've caught something odd.

I bought the original on Friday. I should prolly start listening to the album again. Oh yeah, the last two tracks from the opening post tracklist aren't on the retail version.

The last two tracks belong to another album; the website/source got it wrong.

Did anyone get their CD yet? I got mine a few hours ago, and I must say I really like the 3D art. Also, my Tool/APC collection:

http://img211.imageshack.us/img211/2434/tool0op.jpg

From top to bottom, left to right:

APC - The Outsider DVD (Exclusive Dutch version)
APC - aMOTION (DVD + remix CD of eMOTIVe)
APC - The Outsider DVD (Extended Music Video)
APC - Mer de Noms
APC - Thirteenth Step
APC - eMOTIVe
Tool - Opiate
Tool - Undertow
Tool - Aenima
Tool - Lateralus
Tool - 10,000 Days
Tool - Parabola DVD
Tool - Schism DVD

Damn Grawl. Nice collection.

However you are missing Tool - Salival though its pretty rare to find.

I was able to find it, but they asked 50 Euro ($63) for it, so I decided not to buy it.

That's not a bad price, actually. I've seen them marked for quite a bit more.